Unix Tips

Commands useful for bioinformatics

grep

Grep for Regular ExPressions

grep -A1 : this and the next line
grep -c : to count

sed

Streamline EDitor

sed -d 's/--/d' : to delete stuff

cut

To get the tenth column a text file:

cut -f 10 

awk

Packages

byubo is package to generate taskbar in the shell.

Abbreviations